PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G38000.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 308aa    MW: 33471.1 Da    PI: 11.1778
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G38000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.23e-122002891099
            NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                       e ++d    ++P+ar+++i++a++   + s ea  l+ ka e+f+  ++  ++ +a + +++++   ++++av + + ++fl d vp++
  OMERI03G38000.2 200 AEAVADHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADDAYRNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 289
                      56777888889****************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.61E-19188289IPR009072Histone-fold
PfamPF008089.0E-13210273IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-20211288IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGKKKALTN PASPSASAST STPKKSTAIA KDRSTPKPRK NPNPNPKDEA PPPPANNKRR  60
NPQGGSKRNK KQDASADAGT PSKKPKRQPP EPKPRKHMGA KSEKPHRVSG EGEKPTPTKK  120
KKKKESNKEP KREKQQASAP MSTPSKKNKE AKRDTAGAGK PTPTKRKLAD VDPPQGRPSG  180
EGQASSPTPA KKRKDKAAAA EAVADHGAGS FPMARVRQIM RAEDATIRPS NEAVFLINKA  240
TEIFLKRFAD DAYRNALKDR KKSIVYDNLS TAVCNQKRYK FLSDFVPQKV TAEDALKAPV  300
SSQVNQRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18295KKPKRQPPEPKPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036070.0AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628751.11e-151PREDICTED: putative NPIP-like protein
RefseqXP_015628750.11e-151PREDICTED: putative NPIP-like protein
TrEMBLA0A0E0D9N10.0A0A0E0D9N1_9ORYZ; Uncharacterized protein
STRINGLOC_Os03g63530.11e-151(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-27nuclear factor Y, subunit C10